Ampath Chats

BRCA Gene Testing: A General Overview

Ampath Chats
BRCA Gene Testing: A General Overview
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by Dr. George Gericke, Clinical Geneticist & Sarah Walters, Genetic Counsellor

PATHCHAT Edition No. 10
Please contact your local Ampath pathologist for more information.

Understanding BRCA1 and BRCA2 Mutations

🔹 Key Facts:

  • BRCA1 and BRCA2 mutations account for:
    • 5% of all breast cancer cases.
    • 10–15% of all ovarian cancer cases.
  • Women with BRCA1/2 mutations have:
    • 50–85% lifetime risk of developing breast cancer.
    • 15–40% lifetime risk of developing ovarian cancer.
    • Higher risk of a second breast cancer diagnosis.

🔹 Types of BRCA Mutations:

  • Over 1,000 mutations have been identified in BRCA1 and BRCA2.
  • Some mutations are high-risk, while others are benign genetic variations.
  • Cancer risk depends on the specific mutation and other individual factors.

🔹 BRCA Mutations in Men:

  • BRCA1 mutation carriers may have an increased risk of breast and prostate cancer.
  • BRCA2 mutation carriers have:
    • >10% lifetime risk of developing breast cancer.
    • 5–7 times higher risk of developing prostate cancer.
    • More aggressive prostate cancer progression.
  • Men aged 40–69 with a family history of prostate, breast, or ovarian cancer should:
    • Undergo annual PSA testing.
    • Consider BRCA1/2 testing if PSA >3 ng/mL.
    • Consider screening mammography for BRCA2 carriers.

Determining Risk & When to Refer for Genetic Testing

🔹 Step 1: Take a Three-Generation Family History

  • Consider both paternal and maternal family history.
  • Men may be non-penetrant gene carriers, making paternal history equally important.

🔹 Step 2: Test the Most Likely Carrier First

  • To minimize non-informative negative test results, test the family member most likely to carry a mutation first.

🔹 Step 3: Store DNA for Future Testing

  • Extracted DNA from a patient with advanced cancer (breast, ovarian, prostate) can help in assessing other family members' risks later.

🔹 Step 4: Consider BRCA Testing for Triple-Negative Breast Cancer

  • Triple-negative breast cancer (ER-, PR-, HER2-) diagnosed before age 60 is an indication for BRCA testing, regardless of family history.
  • Triple-negative breast cancer occurs 3× more frequently in women of African descent.

🔹 Step 5: Consider Population-Specific Testing

  • Founder mutations are more common in certain populations, making targeted testing more cost-effective:
    • Ashkenazi Jewish descent & Afrikaner populations – Founder mutations account for ~90% of BRCA mutations.
    • Western Cape Coloured & Xhosa populations – A frequent founder mutation has been identified.

Considerations for BRCA Testing

🔹 BRCA Testing is NOT Diagnostic

  • It determines lifetime cancer risk for mutation carriers but does not confirm cancer presence.
  • Not all cases of familial breast cancer are due to BRCA mutations.
  • Negative BRCA results do not rule out genetic susceptibility to cancer.

🔹 Implications for Breast Cancer Patients

  • Genetic testing at diagnosis can inform surgical and treatment decisions.
  • Patients with deleterious mutations may opt for risk-reducing surgery on the contralateral breast at the same time as therapeutic surgery.

🔹 Common Misconceptions

  • BRCA testing does not simply return a “yes” or “no” answer about inherited cancer risk.
  • The test cannot detect all genetic risk factors for breast cancer.

🔹 More Information on BRCA Testing:

When to Refer for Genetic Risk Evaluation

🔹 Individuals with Breast Cancer and One or More of the Following:

  • Early-onset breast cancer.
  • Triple-negative breast cancer (ER-, PR-, HER2-).
  • Two primary breast cancers in the same individual.
  • Breast cancer + one or more of the following family history criteria:
    • >1 close relative with breast cancer <50 years old.
    • >1 close relative with ovarian/fallopian tube/primary peritoneal cancer.
    • >2 close relatives with breast and/or pancreatic cancer.
  • Breast cancer + additional cancers in the family (thyroid, sarcoma, endometrial, pancreatic, brain, leukemia, etc.).
  • Ovarian, fallopian tube, or primary peritoneal cancer.
  • Male breast cancer.

🔹 Individuals Without Cancer But With a Strong Family History:

  • >2 breast cancer cases in the same family (maternal or paternal).
  • >1 ovarian cancer case in the same family.
  • First- or second-degree relative with breast cancer <45 years old.
  • A known BRCA mutation in a family member.

Pre-Test & Post-Test Genetic Counselling

🔹 Pre-Test Genetic Counselling
A genetic counsellor can:

  • Assess risk based on family history.
  • Explain test limitations, costs, and turnaround times.
  • Discuss multiple testing tiers and financial implications.

🔹 Testing Considerations

a) Testing Family Members & Hereditary Risk

  • BRCA mutations can be inherited from either parent and passed to sons and daughters.
  • Each child of a carrier has a 50% chance of inheriting the mutation.
  • Homozygous BRCA2 mutations can lead to Fanconi anaemia (FANCD1).

b) Testing in Minors

  • Guidelines recommend delaying genetic testing for adult-onset cancers until age 18.
  • Cancer screening in BRCA carriers typically starts in the mid-20s.

c) When to Consider Full BRCA Sequencing

  • Ashkenazi Jewish or Afrikaner individuals with mixed ancestry.
  • Families with strong breast/ovarian cancer history.

d) Targeted Testing of Family Members

  • If a known BRCA mutation is identified in a family, relatives can be tested only for that specific mutationLess expensive than full sequencing.

🔹 Post-Test Genetic Counselling

  • For BRCA-positive individuals:
    • Explanation of inherited risk & clinical implications.
    • Review of risk management options.
  • For BRCA-negative individuals:
    • 70% of negative results are inconclusive.
    • Cancer risk may still be high if family history is strong.
    • A negative test does not rule out other genetic risks.

Other Genes Linked to Hereditary Breast Cancer

🔹 Genes with High Breast Cancer Risk:

  • BRCA1 (65–81% lifetime risk) – Linked to early-onset breast & ovarian cancer.
  • BRCA2 (45–85% lifetime risk) – Also linked to pancreatic & male breast cancer.
  • TP53 – Associated with Li-Fraumeni syndrome (sarcoma, brain tumours, adrenal cancer).
  • PTEN – Linked to Cowden syndrome (thyroid, endometrial, and colorectal cancer).