Lab Updates

Sexually Transmitted Diseases Multiplex PCR (STD PCR)

Lab Updates
Sexually Transmitted Diseases Multiplex PCR (STD PCR)
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August 2023
Ampath | ampath.co.za

Why It Matters

  • Over 1 million new STIs occur globally each day
  • Many are asymptomatic, yet carry serious complications like:
    • HIV transmission
    • Infertility
    • Chronic pelvic pain
    • Ectopic pregnancy
    • Miscarriage
    • Neonatal infections
  • Syndromic management is widely used in South Africa due to affordability and simplicity, but:
    • It may lead to misdiagnosis
    • Encourages inappropriate treatment
    • Lacks precision in recurrent or complex cases

About the STD PCR Panel

Pathogens Detected

  • Neisseria gonorrhoeae
  • Chlamydia trachomatis
  • Mycoplasma genitalium
  • Trichomonas vaginalis

Note on other mycoplasmas:

  • Ureaplasma urealyticum, Ureaplasma parvum, Mycoplasma hominis are generally considered commensal flora.
  • Their clinical relevance is limited, except in pregnancy, where they've been linked to adverse outcomes like chorioamnionitis.

Who Should Be Tested?

  • Patients with recurrent vaginal or urethral discharge
  • Pregnant females with discharge
  • Pregnant females exposed to partners with genital discharge
  • Any patient with genital discharge who requests testing

Specimen Types Accepted

  • Urine
  • Urethral swab
  • Vaginal swab
  • Liquid-based cytology

Test Information

  • Mnemonic: STDPCR
  • Turnaround time: 48 hours (from receipt in the lab)

Ampath’s 5-Year Review Findings

  • 13% of all submitted STD PCR samples tested positive for at least one pathogen
  • 10% of positive cases involved mixed infections

Observed Positivity Rates:

In Males:

  • Neisseria gonorrhoeae – 6%
  • Chlamydia trachomatis – 5%
  • Mycoplasma genitalium – 3%
  • Trichomonas vaginalis – 1%

In Females:

  • Neisseria gonorrhoeae – 2%
  • Chlamydia trachomatis – 2%
  • Mycoplasma genitalium – 2%
  • Trichomonas vaginalis – 2%

Other Diagnostic Considerations

  • Bacterial vaginosis and vulvovaginal candidiasis remain leading causes of discharge
  • Can be tested via:
    • Vaginal swab for MCS
    • Bacterial vaginosis PCR (BVPCR)

Comprehensive Sexual Health Testing Should Also Include:

  • HIV
  • Hepatitis B and C
  • Syphilis
  • Cervical cancer screening

📌 For further guidance, contact your local Ampath representative or pathologist.